# FinnGen Public Documentation

## R13

- [Introduction](https://finngen.gitbook.io/documentation/master.md)
- [Data download](https://finngen.gitbook.io/documentation/data-download.md)
- [Data description](https://finngen.gitbook.io/documentation/data-description.md): File naming pattern and file structure
- [Data releases](https://finngen.gitbook.io/documentation/releases.md)
- [How to cite](https://finngen.gitbook.io/documentation/how-to-cite.md)
- [Participating biobanks/cohorts](https://finngen.gitbook.io/documentation/methods/cohort-description.md)
- [Genotypes](https://finngen.gitbook.io/documentation/methods/genotype-imputation.md)
- [Genotype data](https://finngen.gitbook.io/documentation/methods/genotype-imputation/genotype-data.md)
- [Genotype imputation](https://finngen.gitbook.io/documentation/methods/genotype-imputation/genotype-imputation.md)
- [SISu reference panel](https://finngen.gitbook.io/documentation/methods/genotype-imputation/sisu-reference-panel.md)
- [Software used](https://finngen.gitbook.io/documentation/methods/genotype-imputation/software-used.md)
- [LD estimation](https://finngen.gitbook.io/documentation/methods/genotype-imputation/ld-estimation.md)
- [Endpoints](https://finngen.gitbook.io/documentation/methods/endpoints.md)
- [GWAS](https://finngen.gitbook.io/documentation/methods/phewas.md)
- [Sample QC and PCA](https://finngen.gitbook.io/documentation/methods/phewas/quality-checks.md)
- [Association tests](https://finngen.gitbook.io/documentation/methods/phewas/logistic-regression.md)
- [PheWeb](https://finngen.gitbook.io/documentation/methods/pheweb.md)
- [Colocalization](https://finngen.gitbook.io/documentation/methods/colocalization.md)
- [Finemapping](https://finngen.gitbook.io/documentation/methods/finemapping.md)
- [LoF variant burden](https://finngen.gitbook.io/documentation/methods/lof-variant-burden.md): Gene-based burden test results of loss of function variants (LoFs).
- [HLA region analysis](https://finngen.gitbook.io/documentation/methods/hla-region-analysis.md)
- [Contact](https://finngen.gitbook.io/documentation/methods/contact.md)

## R12

- [Introduction](https://finngen.gitbook.io/documentation/r12/master.md)
- [Data download](https://finngen.gitbook.io/documentation/r12/data-download.md)
- [Data description](https://finngen.gitbook.io/documentation/r12/data-description.md): File naming pattern and file structure
- [Data releases](https://finngen.gitbook.io/documentation/r12/releases.md)
- [How to cite](https://finngen.gitbook.io/documentation/r12/how-to-cite.md)
- [Participating biobanks/cohorts](https://finngen.gitbook.io/documentation/r12/methods/cohort-description.md)
- [Genotypes](https://finngen.gitbook.io/documentation/r12/methods/genotype-imputation.md)
- [Genotype data](https://finngen.gitbook.io/documentation/r12/methods/genotype-imputation/genotype-data.md)
- [Genotype imputation](https://finngen.gitbook.io/documentation/r12/methods/genotype-imputation/genotype-imputation.md)
- [SISu reference panel](https://finngen.gitbook.io/documentation/r12/methods/genotype-imputation/sisu-reference-panel.md)
- [Software used](https://finngen.gitbook.io/documentation/r12/methods/genotype-imputation/software-used.md)
- [LD estimation](https://finngen.gitbook.io/documentation/r12/methods/genotype-imputation/ld-estimation.md)
- [Endpoints](https://finngen.gitbook.io/documentation/r12/methods/endpoints.md)
- [GWAS](https://finngen.gitbook.io/documentation/r12/methods/phewas.md)
- [Sample QC and PCA](https://finngen.gitbook.io/documentation/r12/methods/phewas/quality-checks.md)
- [Association tests](https://finngen.gitbook.io/documentation/r12/methods/phewas/logistic-regression.md)
- [PheWeb](https://finngen.gitbook.io/documentation/r12/methods/pheweb.md)
- [Colocalization](https://finngen.gitbook.io/documentation/r12/methods/colocalization.md)
- [Finemapping](https://finngen.gitbook.io/documentation/r12/methods/finemapping.md)
- [Meta-analysis](https://finngen.gitbook.io/documentation/r12/methods/meta-analysis.md)
- [LoF variant burden](https://finngen.gitbook.io/documentation/r12/methods/lof-variant-burden.md): Gene-based burden test results of loss of function variants (LoFs).
- [HLA region analysis](https://finngen.gitbook.io/documentation/r12/methods/hla-region-analysis.md)
- [Contact](https://finngen.gitbook.io/documentation/r12/methods/contact.md)

## R11

- [Introduction](https://finngen.gitbook.io/documentation/r11/master.md)
- [Data download](https://finngen.gitbook.io/documentation/r11/data-download.md)
- [Data description](https://finngen.gitbook.io/documentation/r11/data-description.md): File naming pattern and file structure
- [Data releases](https://finngen.gitbook.io/documentation/r11/releases.md)
- [How to cite](https://finngen.gitbook.io/documentation/r11/how-to-cite.md)
- [Participating biobanks/cohorts](https://finngen.gitbook.io/documentation/r11/methods/cohort-description.md)
- [Genotypes](https://finngen.gitbook.io/documentation/r11/methods/genotype-imputation.md)
- [Genotype data](https://finngen.gitbook.io/documentation/r11/methods/genotype-imputation/genotype-data.md)
- [Genotype imputation](https://finngen.gitbook.io/documentation/r11/methods/genotype-imputation/genotype-imputation.md)
- [SISu reference panel](https://finngen.gitbook.io/documentation/r11/methods/genotype-imputation/sisu-reference-panel.md)
- [Software used](https://finngen.gitbook.io/documentation/r11/methods/genotype-imputation/software-used.md)
- [LD estimation](https://finngen.gitbook.io/documentation/r11/methods/genotype-imputation/ld-estimation.md)
- [Endpoints](https://finngen.gitbook.io/documentation/r11/methods/endpoints.md)
- [GWAS](https://finngen.gitbook.io/documentation/r11/methods/phewas.md)
- [Sample QC and PCA](https://finngen.gitbook.io/documentation/r11/methods/phewas/quality-checks.md)
- [Association tests](https://finngen.gitbook.io/documentation/r11/methods/phewas/logistic-regression.md)
- [PheWeb](https://finngen.gitbook.io/documentation/r11/methods/pheweb.md)
- [Colocalization](https://finngen.gitbook.io/documentation/r11/methods/colocalization.md)
- [LoF variant burden](https://finngen.gitbook.io/documentation/r11/methods/lof-variant-burden.md): Gene-based burden test results of loss of function variants (LoFs).
- [Fine-mapping](https://finngen.gitbook.io/documentation/r11/methods/finemapping.md)
- [pQTL analysis](https://finngen.gitbook.io/documentation/r11/methods/pqtl-analysis.md)
- [HLA region analysis](https://finngen.gitbook.io/documentation/r11/methods/hla-region-analysis.md)
- [Contact](https://finngen.gitbook.io/documentation/r11/methods/contact.md)

## R10

- [Introduction](https://finngen.gitbook.io/documentation/r10/master.md)
- [Data download](https://finngen.gitbook.io/documentation/r10/data-download.md)
- [Data description](https://finngen.gitbook.io/documentation/r10/data-description.md): File naming pattern and file structure
- [Data releases](https://finngen.gitbook.io/documentation/r10/releases.md)
- [How to cite](https://finngen.gitbook.io/documentation/r10/how-to-cite.md)
- [Participating biobanks/cohorts](https://finngen.gitbook.io/documentation/r10/methods/cohort-description.md)
- [Genotypes](https://finngen.gitbook.io/documentation/r10/methods/genotype-imputation.md)
- [Genotype data](https://finngen.gitbook.io/documentation/r10/methods/genotype-imputation/genotype-data.md)
- [Genotype imputation](https://finngen.gitbook.io/documentation/r10/methods/genotype-imputation/genotype-imputation.md)
- [SISu reference panel](https://finngen.gitbook.io/documentation/r10/methods/genotype-imputation/sisu-reference-panel.md)
- [Software used](https://finngen.gitbook.io/documentation/r10/methods/genotype-imputation/software-used.md)
- [LD estimation](https://finngen.gitbook.io/documentation/r10/methods/genotype-imputation/ld-estimation.md)
- [Endpoints](https://finngen.gitbook.io/documentation/r10/methods/endpoints.md)
- [GWAS](https://finngen.gitbook.io/documentation/r10/methods/phewas.md)
- [Sample QC and PCA](https://finngen.gitbook.io/documentation/r10/methods/phewas/quality-checks.md)
- [Association tests](https://finngen.gitbook.io/documentation/r10/methods/phewas/logistic-regression.md)
- [PheWeb](https://finngen.gitbook.io/documentation/r10/methods/pheweb.md)
- [Colocalization](https://finngen.gitbook.io/documentation/r10/methods/colocalization.md)
- [LoF variant burden](https://finngen.gitbook.io/documentation/r10/methods/lof-variant-burden.md): Gene-based burden test results of loss of function variants (LoFs).
- [Fine-mapping](https://finngen.gitbook.io/documentation/r10/methods/finemapping.md)
- [pQTL analysis](https://finngen.gitbook.io/documentation/r10/methods/pqtl-analysis.md)
- [HLA region analysis](https://finngen.gitbook.io/documentation/r10/methods/hla-region-analysis.md)
- [Contact](https://finngen.gitbook.io/documentation/r10/methods/contact.md)

## R9

- [Introduction](https://finngen.gitbook.io/documentation/r9/master.md)
- [Data download](https://finngen.gitbook.io/documentation/r9/data-download.md)
- [Data description](https://finngen.gitbook.io/documentation/r9/data-description.md): File naming pattern and file structure
- [Data releases](https://finngen.gitbook.io/documentation/r9/releases.md)
- [How to cite](https://finngen.gitbook.io/documentation/r9/how-to-cite.md)
- [Participating biobanks/cohorts](https://finngen.gitbook.io/documentation/r9/methods/cohort-description.md)
- [Genotypes](https://finngen.gitbook.io/documentation/r9/methods/genotype-imputation.md)
- [Genotype data](https://finngen.gitbook.io/documentation/r9/methods/genotype-imputation/genotype-data.md)
- [Genotype imputation](https://finngen.gitbook.io/documentation/r9/methods/genotype-imputation/genotype-imputation.md)
- [SISu reference panel](https://finngen.gitbook.io/documentation/r9/methods/genotype-imputation/sisu-reference-panel.md)
- [Software used](https://finngen.gitbook.io/documentation/r9/methods/genotype-imputation/software-used.md)
- [LD estimation](https://finngen.gitbook.io/documentation/r9/methods/genotype-imputation/ld-estimation.md)
- [Endpoints](https://finngen.gitbook.io/documentation/r9/methods/endpoints.md)
- [GWAS](https://finngen.gitbook.io/documentation/r9/methods/phewas.md)
- [Sample QC and PCA](https://finngen.gitbook.io/documentation/r9/methods/phewas/quality-checks.md)
- [Association tests](https://finngen.gitbook.io/documentation/r9/methods/phewas/logistic-regression.md)
- [PheWeb](https://finngen.gitbook.io/documentation/r9/methods/pheweb.md)
- [Colocalization](https://finngen.gitbook.io/documentation/r9/methods/colocalization.md)
- [Fine-mapping](https://finngen.gitbook.io/documentation/r9/methods/finemapping.md)
- [HLA region analysis](https://finngen.gitbook.io/documentation/r9/methods/hla-region-analysis.md)
- [Contact](https://finngen.gitbook.io/documentation/r9/methods/contact.md)

## R8

- [Introduction](https://finngen.gitbook.io/documentation/r8/master.md)
- [Data download](https://finngen.gitbook.io/documentation/r8/data-download.md)
- [Data description](https://finngen.gitbook.io/documentation/r8/data-description.md): File naming pattern and file structure
- [Data releases](https://finngen.gitbook.io/documentation/r8/releases.md)
- [How to cite](https://finngen.gitbook.io/documentation/r8/how-to-cite.md)
- [Participating biobanks/cohorts](https://finngen.gitbook.io/documentation/r8/methods/cohort-description.md)
- [Genotypes](https://finngen.gitbook.io/documentation/r8/methods/genotype-imputation.md)
- [Genotype data](https://finngen.gitbook.io/documentation/r8/methods/genotype-imputation/genotype-data.md)
- [Genotype imputation](https://finngen.gitbook.io/documentation/r8/methods/genotype-imputation/genotype-imputation.md)
- [SISu reference panel](https://finngen.gitbook.io/documentation/r8/methods/genotype-imputation/sisu-reference-panel.md)
- [Software used](https://finngen.gitbook.io/documentation/r8/methods/genotype-imputation/software-used.md)
- [LD estimation](https://finngen.gitbook.io/documentation/r8/methods/genotype-imputation/ld-estimation.md)
- [Endpoints](https://finngen.gitbook.io/documentation/r8/methods/endpoints.md)
- [GWAS](https://finngen.gitbook.io/documentation/r8/methods/phewas.md)
- [Sample QC and PCA](https://finngen.gitbook.io/documentation/r8/methods/phewas/quality-checks.md)
- [Association tests](https://finngen.gitbook.io/documentation/r8/methods/phewas/logistic-regression.md)
- [PheWeb](https://finngen.gitbook.io/documentation/r8/methods/pheweb.md)
- [Colocalization](https://finngen.gitbook.io/documentation/r8/methods/colocalization.md)
- [Fine-mapping](https://finngen.gitbook.io/documentation/r8/methods/finemapping.md)
- [Contact](https://finngen.gitbook.io/documentation/r8/methods/contact.md)

## R7

- [Introduction](https://finngen.gitbook.io/documentation/r7/master.md)
- [Data download](https://finngen.gitbook.io/documentation/r7/data-download.md)
- [Data description](https://finngen.gitbook.io/documentation/r7/data-description.md): File naming pattern and file structure
- [Data releases](https://finngen.gitbook.io/documentation/r7/releases.md)
- [How to cite](https://finngen.gitbook.io/documentation/r7/how-to-cite.md)
- [Participating biobanks/cohorts](https://finngen.gitbook.io/documentation/r7/methods/cohort-description.md)
- [Genotypes](https://finngen.gitbook.io/documentation/r7/methods/genotype-imputation.md)
- [Genotype data](https://finngen.gitbook.io/documentation/r7/methods/genotype-imputation/genotype-data.md)
- [Genotype imputation](https://finngen.gitbook.io/documentation/r7/methods/genotype-imputation/genotype-imputation.md)
- [SISu reference panel](https://finngen.gitbook.io/documentation/r7/methods/genotype-imputation/sisu-reference-panel.md)
- [Software used](https://finngen.gitbook.io/documentation/r7/methods/genotype-imputation/software-used.md)
- [LD estimation](https://finngen.gitbook.io/documentation/r7/methods/genotype-imputation/ld-estimation.md)
- [Endpoints](https://finngen.gitbook.io/documentation/r7/methods/endpoints.md)
- [GWAS](https://finngen.gitbook.io/documentation/r7/methods/phewas.md)
- [Sample QC and PCA](https://finngen.gitbook.io/documentation/r7/methods/phewas/quality-checks.md)
- [Association tests](https://finngen.gitbook.io/documentation/r7/methods/phewas/logistic-regression.md)
- [PheWeb](https://finngen.gitbook.io/documentation/r7/methods/pheweb.md)
- [Colocalization](https://finngen.gitbook.io/documentation/r7/methods/colocalization.md)
- [Fine-mapping](https://finngen.gitbook.io/documentation/r7/methods/finemapping.md)
- [Contact](https://finngen.gitbook.io/documentation/r7/methods/contact.md)

## R6

- [Introduction](https://finngen.gitbook.io/documentation/r6/master.md)
- [Data download](https://finngen.gitbook.io/documentation/r6/data-download.md)
- [Data description](https://finngen.gitbook.io/documentation/r6/data-description.md): File naming pattern and file structure
- [Data releases](https://finngen.gitbook.io/documentation/r6/releases.md)
- [How to cite](https://finngen.gitbook.io/documentation/r6/how-to-cite.md)
- [Participating biobanks/cohorts](https://finngen.gitbook.io/documentation/r6/methods/cohort-description.md)
- [Genotypes](https://finngen.gitbook.io/documentation/r6/methods/genotype-imputation.md)
- [Genotype data](https://finngen.gitbook.io/documentation/r6/methods/genotype-imputation/genotype-data.md)
- [Genotype imputation](https://finngen.gitbook.io/documentation/r6/methods/genotype-imputation/genotype-imputation.md)
- [SISu reference panel](https://finngen.gitbook.io/documentation/r6/methods/genotype-imputation/sisu-reference-panel.md)
- [Software used](https://finngen.gitbook.io/documentation/r6/methods/genotype-imputation/software-used.md)
- [LD estimation](https://finngen.gitbook.io/documentation/r6/methods/genotype-imputation/ld-estimation.md)
- [Endpoints](https://finngen.gitbook.io/documentation/r6/methods/endpoints.md)
- [GWAS](https://finngen.gitbook.io/documentation/r6/methods/phewas.md)
- [Sample QC and PCA](https://finngen.gitbook.io/documentation/r6/methods/phewas/quality-checks.md)
- [Association tests](https://finngen.gitbook.io/documentation/r6/methods/phewas/logistic-regression.md)
- [PheWeb](https://finngen.gitbook.io/documentation/r6/methods/pheweb.md)
- [Colocalization](https://finngen.gitbook.io/documentation/r6/methods/colocalization.md)
- [Fine-mapping](https://finngen.gitbook.io/documentation/r6/methods/finemapping.md)
- [Contact](https://finngen.gitbook.io/documentation/r6/methods/contact.md)

## R5

- [Introduction](https://finngen.gitbook.io/documentation/r5/master.md)
- [Data download](https://finngen.gitbook.io/documentation/r5/data-download.md)
- [Data description](https://finngen.gitbook.io/documentation/r5/data-description.md): File naming pattern and file structure
- [Data releases](https://finngen.gitbook.io/documentation/r5/releases.md)
- [How to cite](https://finngen.gitbook.io/documentation/r5/how-to-cite.md)
- [Participating biobanks/cohorts](https://finngen.gitbook.io/documentation/r5/methods/cohort-description.md)
- [Genotypes](https://finngen.gitbook.io/documentation/r5/methods/genotype-imputation.md)
- [Genotype data](https://finngen.gitbook.io/documentation/r5/methods/genotype-imputation/genotype-data.md)
- [Genotype imputation](https://finngen.gitbook.io/documentation/r5/methods/genotype-imputation/genotype-imputation.md)
- [SISu reference panel](https://finngen.gitbook.io/documentation/r5/methods/genotype-imputation/sisu-reference-panel.md)
- [Software used](https://finngen.gitbook.io/documentation/r5/methods/genotype-imputation/software-used.md)
- [LD estimation](https://finngen.gitbook.io/documentation/r5/methods/genotype-imputation/ld-estimation.md)
- [Endpoints](https://finngen.gitbook.io/documentation/r5/methods/endpoints.md)
- [GWAS](https://finngen.gitbook.io/documentation/r5/methods/phewas.md)
- [Sample QC and PCA](https://finngen.gitbook.io/documentation/r5/methods/phewas/quality-checks.md)
- [Association tests](https://finngen.gitbook.io/documentation/r5/methods/phewas/logistic-regression.md)
- [Fine-mapping](https://finngen.gitbook.io/documentation/r5/methods/finemapping.md)
- [Contact](https://finngen.gitbook.io/documentation/r5/methods/contact.md)

## R4

- [Introduction](https://finngen.gitbook.io/documentation/r4/master.md)
- [Data download](https://finngen.gitbook.io/documentation/r4/data-download.md)
- [Data description](https://finngen.gitbook.io/documentation/r4/data-description.md): File naming pattern and file structure
- [Data releases](https://finngen.gitbook.io/documentation/r4/releases.md)
- [How to cite](https://finngen.gitbook.io/documentation/r4/how-to-cite.md)
- [Participating biobanks/cohorts](https://finngen.gitbook.io/documentation/r4/methods/cohort-description.md)
- [Genotypes](https://finngen.gitbook.io/documentation/r4/methods/genotype-imputation.md)
- [Genotype data](https://finngen.gitbook.io/documentation/r4/methods/genotype-imputation/genotype-data.md)
- [Genotype imputation](https://finngen.gitbook.io/documentation/r4/methods/genotype-imputation/genotype-imputation.md)
- [SISu reference panel](https://finngen.gitbook.io/documentation/r4/methods/genotype-imputation/sisu-reference-panel.md)
- [Software used](https://finngen.gitbook.io/documentation/r4/methods/genotype-imputation/software-used.md)
- [LD estimation](https://finngen.gitbook.io/documentation/r4/methods/genotype-imputation/ld-estimation.md)
- [Endpoints](https://finngen.gitbook.io/documentation/r4/methods/endpoints.md)
- [GWAS](https://finngen.gitbook.io/documentation/r4/methods/phewas.md)
- [Sample QC and PCA](https://finngen.gitbook.io/documentation/r4/methods/phewas/quality-checks.md)
- [Association tests](https://finngen.gitbook.io/documentation/r4/methods/phewas/logistic-regression.md)
- [Fine-mapping](https://finngen.gitbook.io/documentation/r4/methods/finemapping.md)
- [Contact](https://finngen.gitbook.io/documentation/r4/methods/contact.md)

## R3

- [Introduction](https://finngen.gitbook.io/documentation/r3/master.md)
- [Data download](https://finngen.gitbook.io/documentation/r3/data-download.md)
- [Data description](https://finngen.gitbook.io/documentation/r3/data-description.md): File naming pattern and file structure
- [Data releases](https://finngen.gitbook.io/documentation/r3/releases.md)
- [How to cite](https://finngen.gitbook.io/documentation/r3/how-to-cite.md)
- [Participating biobanks/cohorts](https://finngen.gitbook.io/documentation/r3/methods/cohort-description.md)
- [Genotypes](https://finngen.gitbook.io/documentation/r3/methods/genotype-imputation.md)
- [Genotype data](https://finngen.gitbook.io/documentation/r3/methods/genotype-imputation/genotype-data.md)
- [Genotype imputation](https://finngen.gitbook.io/documentation/r3/methods/genotype-imputation/genotype-imputation.md)
- [SISu reference panel](https://finngen.gitbook.io/documentation/r3/methods/genotype-imputation/sisu-reference-panel.md)
- [Software used](https://finngen.gitbook.io/documentation/r3/methods/genotype-imputation/software-used.md)
- [LD estimation](https://finngen.gitbook.io/documentation/r3/methods/genotype-imputation/ld-estimation.md)
- [Endpoints](https://finngen.gitbook.io/documentation/r3/methods/endpoints.md)
- [GWAS](https://finngen.gitbook.io/documentation/r3/methods/phewas.md)
- [Sample QC and PCA](https://finngen.gitbook.io/documentation/r3/methods/phewas/quality-checks.md)
- [Association tests](https://finngen.gitbook.io/documentation/r3/methods/phewas/logistic-regression.md)
- [Fine-mapping](https://finngen.gitbook.io/documentation/r3/methods/finemapping.md)
- [Loss of function burden](https://finngen.gitbook.io/documentation/r3/methods/lof-burden.md)
- [Contact](https://finngen.gitbook.io/documentation/r3/methods/contact.md)

## R2

- [Introduction](https://finngen.gitbook.io/documentation/r2/master.md)
- [Data download](https://finngen.gitbook.io/documentation/r2/data-download.md)
- [Data releases](https://finngen.gitbook.io/documentation/r2/releases.md)
- [How to cite](https://finngen.gitbook.io/documentation/r2/how-to-cite.md)
- [Getting started](https://finngen.gitbook.io/documentation/r2/pheweb/introduction.md)
- [Phenotype list](https://finngen.gitbook.io/documentation/r2/pheweb/phenotype-list.md)
- [GWAS overview](https://finngen.gitbook.io/documentation/r2/pheweb/manhattanplot.md)
- [Locus zoom](https://finngen.gitbook.io/documentation/r2/pheweb/locus-zoom.md)
- [Variant view](https://finngen.gitbook.io/documentation/r2/pheweb/variant-view.md)
- [Gene view / LoF burden](https://finngen.gitbook.io/documentation/r2/pheweb/gene-view-lof-burden.md)
- [Participating biobanks/cohorts](https://finngen.gitbook.io/documentation/r2/methods/cohort-description.md)
- [Genotypes](https://finngen.gitbook.io/documentation/r2/methods/genotype-imputation.md)
- [Genotype data](https://finngen.gitbook.io/documentation/r2/methods/genotype-imputation/genotype-data.md)
- [Genotype imputation](https://finngen.gitbook.io/documentation/r2/methods/genotype-imputation/genotype-imputation.md)
- [SISu reference panel](https://finngen.gitbook.io/documentation/r2/methods/genotype-imputation/sisu-reference-panel.md)
- [Software used](https://finngen.gitbook.io/documentation/r2/methods/genotype-imputation/software-used.md)
- [Endpoints](https://finngen.gitbook.io/documentation/r2/methods/endpoints.md)
- [GWAS](https://finngen.gitbook.io/documentation/r2/methods/phewas.md)
- [Quality control](https://finngen.gitbook.io/documentation/r2/methods/phewas/quality-checks.md)
- [Association tests](https://finngen.gitbook.io/documentation/r2/methods/phewas/logistic-regression.md)
- [Workflows](https://finngen.gitbook.io/documentation/r2/methods/phewas/workflows.md)
- [Loss of function burden](https://finngen.gitbook.io/documentation/r2/methods/lof-burden.md)
- [Contact](https://finngen.gitbook.io/documentation/r2/methods/contact.md)