# Methods

- [Participating biobanks/cohorts](/documentation/methods/cohort-description.md)
- [Genotypes](/documentation/methods/genotype-imputation.md)
- [Genotype data](/documentation/methods/genotype-imputation/genotype-data.md)
- [Genotype imputation](/documentation/methods/genotype-imputation/genotype-imputation.md)
- [SISu reference panel](/documentation/methods/genotype-imputation/sisu-reference-panel.md)
- [Software used](/documentation/methods/genotype-imputation/software-used.md)
- [LD estimation](/documentation/methods/genotype-imputation/ld-estimation.md)
- [Endpoints](/documentation/methods/endpoints.md)
- [GWAS](/documentation/methods/phewas.md)
- [Sample QC and PCA](/documentation/methods/phewas/quality-checks.md)
- [Association tests](/documentation/methods/phewas/logistic-regression.md)
- [PheWeb](/documentation/methods/pheweb.md)
- [Colocalization](/documentation/methods/colocalization.md)
- [Finemapping](/documentation/methods/finemapping.md)
- [Meta-analysis](/documentation/methods/meta-analysis.md)
- [LoF variant burden](/documentation/methods/lof-variant-burden.md): Gene-based burden test results of loss of function variants (LoFs).
- [HLA region analysis](/documentation/methods/hla-region-analysis.md)
- [Contact](/documentation/methods/contact.md)