Last updated 5 years ago
We used the SAIGE software for running the R2 GWAS.
SAIGE is a mixed model logistic regression R/C++ package, able to account for related samples.
We analyzed:
1,122 endpoints
96,499 samples
17,054,975 variants
We included the following covariates in the model: sex, age, 10 PCs, genotyping batch.
