# GWAS

We used the [SAIGE](https://github.com/FINNGEN/SAIGE-IT/releases/tag/saige_r3) (r3 release) software for running the R3 GWAS.

[SAIGE](https://github.com/weizhouUMICH/SAIGE/) is a mixed model logistic regression R/C++ package, able to account for related samples.

We analyzed:

* ​ 1,801 endpoints
* 135,638 samples
* 16,962,023 variants

We included the following covariates in the model: sex, age, 10 PCs, genotyping batch.
