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R4
R4
  • Introduction
  • Data download
  • Data description
  • Data releases
  • How to cite
  • Methods
    • Participating biobanks/cohorts
    • Genotypes
      • Genotype data
      • Genotype imputation
      • SISu reference panel
      • Software used
      • LD estimation
    • Endpoints
    • GWAS
      • Sample QC and PCA
      • Association tests
    • Fine-mapping
    • Contact
    • Github
    • FinnGen
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  1. Methods

Genotypes

PreviousParticipating biobanks/cohortsNextGenotype data

Last updated 4 years ago

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FinnGen individuals were genotyped with Illumina and Affymetrix chip arrays (Illumina Inc., San Diego, and Thermo Fisher Scientific, Santa Clara, CA, USA).

Chip genotype data were imputed using the population-specific SISu v3 imputation reference panel of 3,775 whole genomes.

Merged imputed genotype data is composed of 52 data sets that include samples from multiple cohorts.

  • Total number of individuals: 183,694

  • Total number of variants (merged set): 16,962,023

  • Reference assembly: GRCh38/hg38