# Software used

* Cromwell-29 and 31
* Wdltool-0.14 
* Plink 1.9 and 2.0 
* BCFtools 1.7 and 1.9 
* Eagle 2.3.5 
* Beagle 4.1 (version 08Jun17.d8b)
* R 3.4.1 (packages: data.table 1.10.4, sm 2.2-5.4)