# Methods

- [Participating biobanks/cohorts](/documentation/r9/methods/cohort-description.md)
- [Genotypes](/documentation/r9/methods/genotype-imputation.md)
- [Genotype data](/documentation/r9/methods/genotype-imputation/genotype-data.md)
- [Genotype imputation](/documentation/r9/methods/genotype-imputation/genotype-imputation.md)
- [SISu reference panel](/documentation/r9/methods/genotype-imputation/sisu-reference-panel.md)
- [Software used](/documentation/r9/methods/genotype-imputation/software-used.md)
- [LD estimation](/documentation/r9/methods/genotype-imputation/ld-estimation.md)
- [Endpoints](/documentation/r9/methods/endpoints.md)
- [GWAS](/documentation/r9/methods/phewas.md)
- [Sample QC and PCA](/documentation/r9/methods/phewas/quality-checks.md)
- [Association tests](/documentation/r9/methods/phewas/logistic-regression.md)
- [PheWeb](/documentation/r9/methods/pheweb.md)
- [Colocalization](/documentation/r9/methods/colocalization.md)
- [Fine-mapping](/documentation/r9/methods/finemapping.md)
- [HLA region analysis](/documentation/r9/methods/hla-region-analysis.md)
- [Contact](/documentation/r9/methods/contact.md)