Genotypes

FinnGen individuals were genotyped with Illumina and Affymetrix chip arrays (Illumina Inc., San Diego, and Thermo Fisher Scientific, Santa Clara, CA, USA).

Chip genotype data were imputed using the population-specific SISu v3 imputation reference panel of 3,775 whole genomes.

Post-imputation QC involved excluding variants with imputation INFO < 0.7.

• Total number of individuals: 102,739

• Total number of variants (merged set): 17,054,975

• Reference assembly: GRCh38/hg38