The panel has been divided per chromosome. For example, to use the LD information in the first chromosome,
FG_LD_chr1.bcor would be the file to use.
number of samples: 3775
window size: 1500 kb
number of threads: 96
LD threshold to include correlations: 0.05
LDstore v1.1 can be downloaded via:
And an example to extract variant range 20 Mb - 50 Mb from chromosome 7 is as follows:
ldstore --bcor FG_LD_chr7.bcor --incl-range 20000000-50000000 --table output_file_name.table
It is not preferred to use these LD estimate files for e.g. fine-mapping, since many of the fine-mapping methods (e.g. SuSiE) require in-sample LD information for good results!