A comprehensive list of key file locations in FinnGen?

Unfortunately, no such magical list exists at this time. However, FinnGen does have a few fairly comprehensive summary files based on your specific needs.

  • A catalog of FinnGen R4 data located at finngen_production_library_red. /finngen/library-red/finngen_R4/catalog.txt

  • R4 summary statistics: gs://finngen-production-library-green/finngen_R4/finngen_R4_analysis_data/summary_stats/release/

  • For any phenotypes without metadata, e.g. inflation factors: gs://finngen-production-library-green/finngen_R4/finngen_R4_analysis_data/finngen_R4_pheno_n.tsv

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