Imputed genotypes in PLINK format
This page has been last updated for R11.
Sandbox directory
Imputed genotypes in the PLINK format are available in the following Sandbox directory:
/finngen/library-red/finngen_R[RELEASE]/genotype_plink_1.0
Data files
Two sets of PLINK files are available:
all variants
HapMap3 filtered variants
Both sets come with their .bed, .bim .fam, .afreq files.
Please refer to the readme file in sandbox directory for full details of the available data.
All variants
All variants are available in the following files:
data/finngen_R[RELEASE].bed
data/finngen_R[RELEASE].bim
data/finngen_R[RELEASE].fam
data/finngen_R[RELEASE].afreq
HapMap3 filtered variants
HapMap3 filtered variants are available in the following files:
data/finngen_R[RELEASE]_hm3.bed
data/finngen_R[RELEASE]_hm3.bim
data/finngen_R[RELEASE]_hm3.fam
data/finngen_R[RELEASE]_hm3.afreq
Further information
Read more about the Plink 2.0 data format.
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