Tool Catalog
Publicly available web tools (no FinnGen account needed):
Core endpoint definitions and relationships between endpoints. Results from CodeWAS and LabWAS tools and mortality from FinRegistry. Includes also Kanta lab data and their distributions.
Tool to understand the relationships between FinnGen core endpoints
Multiple Manhattan Plot to align and browse between 2 to 20 GWAS scans
Lightweight Association Viewer Across Ailments to display PheWAS results for a variant as a volcano plot
A site detailing the FinnGen data mapping to the OMOP common data model (CDM)
Look up avaibility and OMOP mapping of Kanta lab tests
Repository of the codes for the FinnGen analyses
Web tools for FinnGen green data accounts:
Download the accumulated FinnGen core analysis results from the Google console.
Browse core GWAS results, conditional analysis, finemapping, colocs
Browse FinnGen-UKBB GWAS meta-analysis results
Browse GWAS results for user-defined phenotypes
Addititive and recessive phenotype associations for rare and common coding variants
Tool to annotate lead variants with phenotype associations, eQTLs, pQTLs and splice QTLsul
Sandbox environment and tools for FinnGen red data accounts:
Trusted Research Environment (TRE), access to FinnGen individual level data
OHDSI/OMOP tool to define concept sets and cohorts
Import cohorts created elsewhere and explore and operate them, e.g. by using CodeWAS and TimeCodeWAS
View the health history of an individual
Trajectory Visualization Tool to view the health trajectories of a cohort of individuals
View, edit and export genotype data
GUI to assist users running custom GWAS
GUI to help with running Regenie, Finemapping, GATE, etc.
View polygenic scores for existing endpoints or a custom cohort
A command line interface allowing users to query carriers of variants in FinnGen exome data
A web tool to explore FinnGen data stored in BigQuery database
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