Omics data

Proteomics

Olink batch 1,2 and 3

• Data and analysis combining 3 batches of Olink data, bringing the total number of processed samples with Olink to 1,990.

• Raw proteomics data finngen/library-red/EA5/proteomics/olink/second_batch/

• pqtl, finemap and autoreporting gs://finngen-production-library-green/omics/proteomics/release_2023_10_11/

Olink batch 1,2

• Data and analysis from the second batch of Olink Data (n=813) and combined with the first, bringing the total number of processed samples with Olink to 1,534.

• After QC and id mapping the number of individuals is 1,243.

• Raw proteomics data of batch2 and combined batch1+2 available in Sandbox

  • finngen/library-red/EA5/proteomics/olink/second_batch/

• pQTL summary stats and finemapping for batch 1+2 combined available in the green libary:

  • library-green/omics/proteomics/release_2023_08_08/data/Olink/Finemap/

  • library-green/omics/proteomics/release_2023_08_08/data/Olink/pQTL/

• Colocalization of olink batch1+2 to FinnGen traits available here:

• gs://finngen-production-library-green/finngen_R11/finngen_R11_analysis_data/colocalization/data/fg_r11_Olink_batch1_and_2.txt.gz

• Link to explanation of result columns ​Olink data

SomaScan

• Reprocessed SomaScan data from the previous 2 batches to use harmonized with Olink batch 1+2 QC and analysis:

• Raw data:

  • library-red/EA5/proteomics/soma/second_batch/QCd/SOMA_batch_1_2_QC_all_v2.txt

• Analysis pqtl and finemap:

  • library-green/omics/proteomics/release_2023_08_08/data/Somascan/Finemap/

  • library-green/omics/proteomics/release_2023_08_08/data/Somascan/pQTL/

• Coloc:

  • library-green/finngen_R11/finngen_R11_analysis_data/colocalization/data/fg_r11_Soma_v2.txt.gz

• Readme:

  • gs://finngen-production-library-green/omics/proteomics/release_2023_08_08/readme.txt

Link to explanation of result file SomaScan data