Heritabilities

The main output of the pipeline is a file of the format finngen_R[?]_[EUR/FIN].ldsc.heritability.tsv where EUR/FIN depends on the LD panel used. The file contains information about the heritability of all FinnGen phenotypes.

PHENO	Phenotype
H2	Heritability
SE	Standard Error on heritability
INT	Intercept
INT_SE	Error on Intercept
RATIO	Ratio ((intercept-1)/(mean(chi^2)-1))
RATIO_SE	Error of ratio

The data is also stored in finngen_R[?]_[EUR/FIN].ldsc.heritability.json in the json format.

Read more about heritability and genetic correlations.