Register code translation files

Code definitions of each code set and their translations in english can be found from the Members area here and from the Sandbox (paths below):

Medcode_reference:

Diagnoses and procedure codes (as well as KELA codes) in Sandbox:

FinnGen R9:

/finngen/library-green/finngen_R9/finngen_R9_medical_codes/finngen_R9_medcode_ref.tsv

/finngen/library-green/finngen_R9/finngen_R9_medical_codes/finngen_R9_medcode_ref_readme.txt

FinnGen R6:

/finngen/library-green/finngen_R6/finngen_R6_medical_codes/finngen_R6_medcode_ref.tsv

/finngen/library-green/finngen_R6/finngen_R6_medical_codes/finngen_R6_medcode_ref_readme.txt

Diagnoses and procedure codes (as well as KELA codes) in google cloud:

FinnGen R9:

gs://finngen-production-library-green/finngen_R9/finngen_R9_medical_codes/finngen_R9_medcode_ref.tsv

gs://finngen-production-library-green/finngen_R9/finngen_R9_medical_codes/finngen_R9_medcode_ref_readme.txt

FinnGen R6:

gs://finngen-production-library-green/finngen_R6/finngen_R6_medical_codes/finngen_R6_medcode_ref.tsv

gs://finngen-production-library-green/finngen_R6/finngen_R6_medical_codes/finngen_R6_medcode_ref_readme.txt

Drugcode_reference:

ATC codes in Sandbox:

/finngen/library-green/finngen_R6/finngen_R6_medical_codes/ATC_translate_minimal.txt

/finngen/library-green/finngen_R6/finngen_R6_medical_codes/ATC_translate_minimal.txt.READ

ATC codes in google cloud:

gs://finngen-production-library-green/finngen_R6/finngen_R6_medical_codes/ATC_translate_minimal.txt

gs://finngen-production-library-green/finngen_R6/finngen_R6_medical_codes/ATC_translate_minimal.txt.READ

VNRO codes in Sandbox:

/finngen/library-green/finngen_R6/finngen_R6_medical_codes/finngen_R6_drugcode_ref.tsv

/finngen/library-green//finngen_R6/finngen_R6_medical_codes/finngen_R6_drugcode_ref_readme.txt

VNRO codes in google cloud:

gs://finngen-production-library-green/finngen_R6/finngen_R6_medical_codes/finngen_R6_drugcode_ref.tsv

gs://finngen-production-library-green/finngen_R6/finngen_R6_medical_codes/finngen_R6_drugcode_ref_readme.txt

FinnGen VNR data in Sandbox:

FinnGen VNR data provide VNR mapping to RxNorm and between VNR codes and ATC codes, and including dosage, package info, package size, substance name and strength, valid unit value (e.g. "mg"), a factor of the package, calculated total strength of the drug, and commercial name, dosage Form, and Substance Strength of the drug.

Even though VNR data is generated from the codes available on DF6, it can be used for all release data. The VNR codes are available for all data releases.

VNR codes in Sandbox:

/finngen/library-green/finngen_R6/finngen_R6_medical_codes/fgVNR.tsv

/finngen/library-green/finngen_R6/finngen_R6_medical_codes/fgVNR_readme.txt

/finngen/library-green/finngen_R6/finngen_R6_medical_codes/fgVNR_table_definition.tsv

VNR codes in google cloud:

gs://finngen-production-library-green/finngen_R6/finngen_R6_medical_codes