Autoreporting results format

The autoreporting files consist of two file types: variant and group reports.

The variant reports contain

• credible set variants

• annotated using summary statistics

• FinnGen

• assorted additional annotations

• are compared against the GWAS catalog

They are TSV files and contain one row per variant.

The group reports contain formation per credible set. They are aggregated from the variant reports, with one credible set per row.

For more information, see the release documentation:

/library-green/finngen_R8_analysis_documentation/

Columns can and do vary between releases.

The HGNC symbols in the autoreporting files are version 38, as well as the VEP cache. "The most_severe_gene" and "most_severe" columns in the autoreporting file come from the finngen annotation file. Analysis team will update the release documentation to include this information (including those versions) for future releases.

Read more about Autoreporting in FinnGen, and see also FAQ Do the autoreports report the 95% or 99% credible sets