Pairwise endpoint genetic correlation format

This pipeline produces a single file, containing all pairwise genetic correlations between multiple phenotypes.

Its name is structured as finngen_R[?]_[EUR/FIN].ldsc.summary.tsv where EUR/FIN changes based on the LD panel used.

(This refers to genetic correlation, in Risteys you can also see the number of shared cases between endpoints.)

Column name	Description
p1	Phenotype 1
p2	Phenotype 2
rg	Genetic correlation
se	Standard error
z	z-score
p	pvalue
h2_obs	heritabilty of p1
h2_obs_se	SE of heritability of p1
h2_int	heritability intercept for p1
h2_int_se	SE of intercept
gcov_int	intercept of genetic covariance
gcov_int_se	SE of gcov
CONVERGED	A flag if the LDSC model converged