FinnGen Tool Catalog
| Tool | Access type | Brief summary |
|---|---|---|
Google Console (FinnGen green data account) | Download the accumulated FinnGen core analysis result from the Google console. | |
Web (FinnGen green data account) | Browse core GWAS results, conditional analysis, finemapping, colocs | |
Meta-analysis Pheweb [UKBB] | Web (FinnGen green data account) | Browse GWAS results for FG/UKBB |
Web (FinnGen green data account) | Browse GWAS results for user-defined phenotypes | |
Web (FinnGen green data account) | Addititive and recessive phenotype associations for rare and common coding variants | |
Web (FinnGen green data account) | Tool to annotate lead variants with phenotype associations, eQTLs, pQTLs and splice QTLs | |
Web (no account required) | Core endpoint definitions and relationships between endpoints | |
Endpoint Browser (Beta) | Web (no account required) | Tool to understand the relationships between FinnGen core endpoints |
Web (no account required) | Align and browse 2–20 GWAS scans | |
Web (no account required) | Display PheWAS for a variant as lava plot | |
Web (FinnGen red data account) | Trusted Research Environment (TRE), access to FinnGen individual level data. | |
Sandbox (FinnGen red data account) | OHDSI/OMOP tool to define cohorts and concept sets in Sandbox | |
Sandbox (FinnGen red data account) | Tools to work with lists of cohorts as FinnGen IDs in Sandbox | |
Sandbox (FinnGen red data access) | View the health history of an invidual in Sandbox | |
TVT (Patient Trajectories) | Sandbox (FinnGen red data access) | View a cohort of individuals health trajectories in Sandbox |
Sandbox (FinnGen red data access) | View, edit and export genotype data in Sandbox | |
Sandbox (FinnGen red data access) | GUI to assist users running custom GWAS in Sandbox | |
Sandbox (FinnGen red data access) | GUI to help with running Regenie, Finemapping, GATE, etc. in Sandbox | |
Sandbox (FinnGen red data access) | View polygenic scores for existing endpoints or a custom cohort in Sandbox | |
GitHub approval | Repository of code for FinnGen analyses | |
Web (no account required) | Repository of code for OHDSI ETL and accessing FinnGen CDM | |
Sandbox (FinnGen red data access) | Tool for validating the format of user custom GWAS summary stats to be viewable in a PheWeb-style in Sandbox | |
Web (no account required) | Look up avaibility and OMOP mapping of Kanta lab tests |
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